timp 3 rnd systems mab973 metastatic  (R&D Systems)

Journal: Platelets

Article Title: Transcriptomic and functional characterization of megakaryocytic-derived platelet-like particles: impaired aggregation and prominent anti-tumor effects.

doi: 10.1080/09537104.2024.2449344

Figure Lengend Snippet: Figure 7. Signaling axes promoting or inhibiting oncogenicity. (A) Schematic representation of potential signaling axes mediating platelet-PCa pro- oncogenic interactions and PLP-PCa anti-oncogenic interactions. (B) RNA-seq expression values in TPMs of components in the platelet-PCa cell signaling axes. (C) RNA-seq expression values of components in the PLP-PCa cell signaling axes. Data in (B) and (C) presented as the mean ± SEM of n = 44 for platelets and n = 8 independent determinations for PLPs (determinations for MEG-01- and K-562-derived PLPs combined). RNA-Seq TPM values for MDA and RC77 were from a single determination. Statistical analysis was performed using a t-test (*p < .05). (D) Far left panel depicts relative 48-hour matrigel invasion by MDA-PCa-2b (MDA) and RC77T/E (RC77) cells incubated with vehicle (veh) + 5 ug/ml IgG isotype control, PLP + IgG, or PLP + 5 ug/ml neutralizing antibody against TIMP3 (β-TIMP3). Middle panel depicts relative 24-hour caspase activity in MDA and RC77 cells incubated with vehicle (veh) + 5 ug/ml IgG isotype control, PLP + IgG, or PLP + 5 ug/ml neutralizing antibody α-vegfb. Far right panel depicts relative 24-hour caspase activity in MDA cells incubated with conditioned medium (CM) derived from 24-hour culturing of MEG-01 PLPs (CM1), PCa cells + PLPs (CM2), and PCa cells + PLPs + platelets (CM3). Closed and open bars indicate incubation with 5 ug/ml IgG or α-TIMP3, respectively. Cell:PLP ratio was 1:500 and Cell:PLP:platelet ratio was 1:500:500 for all experiments. Data presented as the mean ± SEM of n = 4 independent determinations and analyzed by ANOVA and Dunnett’s post-hoc test. *significantly different (p < .05) compared to corresponding control (veh-containing group). #Significantly different (p < .05) compared to corresponding IgG group. Abbreviations: RC77, RC77T/E; MDA, MDA-PCa -2b; ITGA2B, integrin alpha 2b; ITGB3, integrin beta 3; FN1, fibronectin 1; IL32, interleukin 32; EGF, epidermal growth factor; TGFA, transforming growth factor alpha; EGFR, epidermal growth factor receptor; HER2, human epidermal growth factor receptor 2; ERBB3, human epidermal growth factor receptor 3; EPHA, EPH receptor A; EFNA, ephrin A; TIMP3, tissue inhibitor of metalloproteinases 3; MMP15, matrix metalloproteinase 15; VEGFB, vascular endothelial growth factor B; FGFR1, fibroblast growth factor receptor 1; IGFBP4, insulin-like growth factor-binding protein 4; LPR6, low-density lipoprotein receptor-related protein 6.

Article Snippet: Cells alone included an isotype IgG control (5 μg/ mL), and cells with PLPs were incubated with isotype IgG control (5 μg/ml) or a neutralizing antibody against TIMP3 (5 μg/ml; R&D Systems, Cat #MAB973-SP) or VEGFB (5 μg/ml; R&D Systems, Cat #MAB3372).

Techniques: RNA Sequencing, Expressing, Derivative Assay, Incubation, Control, Activity Assay, Binding Assay

Journal: Brain, behavior, and immunity

Article Title: Single-cell analysis of dorsal root ganglia reveals metalloproteinase signaling in satellite glial cells and pain.

doi: 10.1016/j.bbi.2023.08.005

Figure Lengend Snippet: Fig. 3. Transcriptional and protein expression of Timp3. (A) Schematic illustration of TIMP3′s inhibitory activity on matrix metalloproteinases (MMPs) and on disintegrin and metalloprotease 17 (ADAM17), also called TACE (tumor necrosis factor-α-converting enzyme). (B, C) RNAscope localization of Timp3, Mmp14 and Adam17 mRNA expression in DRG of Plp1-Cre/tdTomato mice, wherein Cre recombinase is expressed in satellite glial cells (SGCs) (B), and in naïve CD1 mice (C). Arrowheads indicate mRNA colocalization of Mmp14 and Adam17 with Timp3 in SGCs, * indicates neurons. Scale bars = 25 μm in (B) and 5 μm in (C). (D) PCR in mouse and human DRG tissues. Samples with omitted RT (reverse transcriptase) show no bands, confirming the specificity of the amplification. (E) Immunofluo rescence of TIMP3 in human DRG tissue. Scale bars = 50 μm. DAPI was used as counterstain. # indicates the fluorescent signal due to the presence of lipofuscins in human DRG neurons.

Article Snippet: Tissues and cultures were washed in PBS, blocked with 1% BSA, 0.2% Triton X-100 in PBS (BSA solution), and incubated in the BSA solution overnight at 4 ◦C with the following primary antibodies: TIMP3 Ab (1:500, Cat# MAB973, R&D Systems), FABP7 Ab (1:1000, Cat# PA524949, Thermo Fisher Scientific) or GFAP Ab (1:1000, Cat# MAB360, Millipore Sigma).

Techniques: Expressing, Activity Assay, RNAscope, Reverse Transcription, Amplification

Journal: Brain, behavior, and immunity

Article Title: Single-cell analysis of dorsal root ganglia reveals metalloproteinase signaling in satellite glial cells and pain.

doi: 10.1016/j.bbi.2023.08.005

Figure Lengend Snippet: Fig. 4. Timp3 controls mechanical and thermal sensitivities in naïve mice. (A) Schematic illustration of the experiment showing the timeline of siRNA injections, pharmacological and biochemical studies. (B) Western blot representative image and quantification show that Timp3 siRNA significantly decreases Timp3 protein levels in DRGs tissues (n = 4). (C) Timp3 siRNA injections do not cause locomotor dysfunction in the Rota-rod test (n = 5). (D) Mechanical and thermal (von Frey, Hargreaves, and dry ice) allodynia induced by Timp3 siRNA compared to a control (Ctrl) non-targeting siRNA (2 µg of siRNA per delivery in the transfection agent PEI, n = 7). (E) Anti-allodynic effect of exogenous recombinant TIMP3 (rTIMP3, 100 ng/site, i.t.), general endogenous tissue inhibitor of MMPs (TIMP-1, 4 pmol/ site), MMP2 and MMP14 inhibitors (10 µg/site, i.t.), TACE/ADAM17 inhibitor (TAPI-2, 1 µg/site, i.t.), and a neutralizing antibody for TNF-α (5 µg/site, i.t.) on mechanical allodynia induced by Timp3 siRNA on day 2. (F) Anti-TIMP3 antibody (TIMP3 Ab, 10 µg/site, i.t.) induces mechanical allodynia compared to IgG control in male and female mice. BL = baseline. Data are expressed as mean ± SEM and statistically analyzed by two-tailed t-test (B, C, E) and Two-way ANOVA followed by Sidak’s post hoc test (D, F). *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001.

Article Snippet: Tissues and cultures were washed in PBS, blocked with 1% BSA, 0.2% Triton X-100 in PBS (BSA solution), and incubated in the BSA solution overnight at 4 ◦C with the following primary antibodies: TIMP3 Ab (1:500, Cat# MAB973, R&D Systems), FABP7 Ab (1:1000, Cat# PA524949, Thermo Fisher Scientific) or GFAP Ab (1:1000, Cat# MAB360, Millipore Sigma).

Techniques: Western Blot, Control, Transfection, Recombinant, Two Tailed Test

Journal: Brain, behavior, and immunity

Article Title: Single-cell analysis of dorsal root ganglia reveals metalloproteinase signaling in satellite glial cells and pain.

doi: 10.1016/j.bbi.2023.08.005

Figure Lengend Snippet: Fig. 5. Recombinant TIMP3 protein reverses and prevents mechanical and cold allodynia in a mouse model of chemotherapy-induced neuropathic pain. (A) Schematic of the experiment showing the timeline of paclitaxel (PAX) or vehicle injections, pharmacological studies, and immunohistochemistry (IHC) analysis. (B) Representative image and (C) quantification of Timp3 protein in mouse DRG tissue 14 days after first injection of PAX or vehicle control (n = 5). (D, E) Paclitaxel- induced mechanical (von Frey) and (F) cold allodynia (dry ice) are significantly, dose-dependently reversed up to 6 h by single intrathecal administration of re combinant TIMP3 protein (rTIMP3, 3–100 ng/site) delivered at day 14 after chemotherapy injection (n = 4–5). (G) Schematic of experiment showing timeline of PAX injections concomitantly with rTIMP3 or PBS, behavioral tests, transcriptional, and histological analysis. (H, I) Repeated administrations of rTIMP3 (100 ng/site, i.t.) prevent paclitaxel-induced mechanical and cold allodynia (n = 5–6). BL = baseline. Data expressed as mean ± SEM, statistically analyzed by two-tailed t-test (C), two-way ANOVA followed by Sidak’s post hoc test (D, F, H, I), and one-way ANOVA followed by Tukey’s post hoc test (E). *P < 0.05, **P < 0.01, ***P < 0.001.

Article Snippet: Tissues and cultures were washed in PBS, blocked with 1% BSA, 0.2% Triton X-100 in PBS (BSA solution), and incubated in the BSA solution overnight at 4 ◦C with the following primary antibodies: TIMP3 Ab (1:500, Cat# MAB973, R&D Systems), FABP7 Ab (1:1000, Cat# PA524949, Thermo Fisher Scientific) or GFAP Ab (1:1000, Cat# MAB360, Millipore Sigma).

Techniques: Recombinant, Immunohistochemistry, Injection, Control, Two Tailed Test

Journal: Brain, behavior, and immunity

Article Title: Single-cell analysis of dorsal root ganglia reveals metalloproteinase signaling in satellite glial cells and pain.

doi: 10.1016/j.bbi.2023.08.005

Figure Lengend Snippet: Fig. 6. Transcriptional analyses of TIMP3 signaling in cultured SGCs after paclitaxel treatment. (A) Schematic of the experi mental design used in cultured SGCs. (B) Representative image and quantification of immunofluorescence intensity of GFAP protein in SGC culture after 24 h of incu bation with paclitaxel (PAX, 300 nM) or vehicle control (Veh; n = 4). (C) Quantifi cation of SGC culture viability 24 h after PAX or Veh treatment (n = 6). (D) Quan tification of mRNA expression levels of Timp3, Mmp2, Mmp14 and Adam17 in SGC culture after PAX or Veh incubation (n = 6). (E) Heat map of mRNA expression of SGC and metalloprotease signaling markers in SGC culture after incubation with pro saptide Tx14 (1 µM) or pioglitazone (PGZ, 10 µM) and PAX compared to vehicle (n = 3). (F) Schematic illustrating the timeline of Tx14, PGZ, or PBS concomitantly treated with PAX, and the behavioral assay. Repeated injections of (G) Tx14 (10 µg/ site, i.t.) or (H) PGZ (100 µg/site, i.t.) prevent paclitaxel-induced mechanical allodynia (n = 6). BL = baseline. Data are expressed as mean ± SEM and statistically analyzed by two-tailed t-test (B, C, D), and Two-way ANOVA followed by Sidak’s post hoc test (G, H): *P < 0.05, **P < 0.01, ***P < 0.001.

Article Snippet: Tissues and cultures were washed in PBS, blocked with 1% BSA, 0.2% Triton X-100 in PBS (BSA solution), and incubated in the BSA solution overnight at 4 ◦C with the following primary antibodies: TIMP3 Ab (1:500, Cat# MAB973, R&D Systems), FABP7 Ab (1:1000, Cat# PA524949, Thermo Fisher Scientific) or GFAP Ab (1:1000, Cat# MAB360, Millipore Sigma).

Techniques: Cell Culture, Immunofluorescence, Control, Expressing, Incubation, Behavioral Assay, Two Tailed Test

Journal: The Scientific World Journal

Article Title: Expressions of MMPs and TIMP-1 in Gastric Ulcers May Differentiate H. pylori -Infected from NSAID-Related Ulcers

doi: 10.1100/2012/539316

Figure Lengend Snippet: The immunohistochemical stains for matrix metalloproteinase (MMP)-3, -7, and -9 and tissue inhibitor of matrix metalloproteinase (TIMP)-1 in the Helicobacter pylori- ( H. pylori- ) infected group, in the nonsteroidal anti-inflammatory drug- (NSAID-) related group, and in the combined H. pylori -infection and NSAID-use group, in superficial epithelial cells and inflammatory cells of the lamina propria of gastric tissues (600x). H. pylori- infected gastric ulcers express higher MMP-7, MMP-9, and TIMP-1 than NSAID-related ulcers. Arrows indicate positive staining.

Article Snippet: Tissue immunohistochemical staining was performed using mouse monoclonal antibodies of anti-human-MMP-3, -7, -9, or TIMP-1 (Chemicon International, Inc., Temecula, CA, USA).

Techniques: Immunohistochemical staining, Infection, Staining

Journal: The Scientific World Journal

Article Title: Expressions of MMPs and TIMP-1 in Gastric Ulcers May Differentiate H. pylori -Infected from NSAID-Related Ulcers

doi: 10.1100/2012/539316

Figure Lengend Snippet: Box plots of the distributions and median scores of MMP-7, and -9 and TIMP-1 in the superficial epithelium of gastric ulcer tissues and nonulcer tissues in different groups, respectively. The P values compared scores according to patients in the H. pylori -infected, NSAID-related, and combined H. pylori -infection and NSAID-use groups by Mann-Whitney U test, and also compared scores according to ulcer tissues and nonulcer tissues by Wilcoxon signed-rank test. In the box plots, the 75th and 25th percentiles are represented by the top and bottom of the box, respectively. The horizontal lines refer to the medians. Abbreviations are as in .

Article Snippet: Tissue immunohistochemical staining was performed using mouse monoclonal antibodies of anti-human-MMP-3, -7, -9, or TIMP-1 (Chemicon International, Inc., Temecula, CA, USA).

Techniques: Infection, MANN-WHITNEY

Journal: The Scientific World Journal

Article Title: Expressions of MMPs and TIMP-1 in Gastric Ulcers May Differentiate H. pylori -Infected from NSAID-Related Ulcers

doi: 10.1100/2012/539316

Figure Lengend Snippet: Box plots of the distributions and median scores of MMP-3, MMP-9, and TIMP-1 in inflammatory cells of the lamina propria of gastric ulcer tissues and nonulcer tissues in different groups, respectively. The P values compared scores according to patients in the H. pylori -infected, NSAID-related, and combined H. pylori -infection and NSAID-use groups by Mann-Whitney U test and also compared scores according to ulcer tissues and nonulcer tissues by Wilcoxon signed-rank test. In the box plots, the 75th and 25th percentiles are represented by the top and bottom of the box, respectively. The horizontal lines refer to the medians. Abbreviations are as in .

Article Snippet: Tissue immunohistochemical staining was performed using mouse monoclonal antibodies of anti-human-MMP-3, -7, -9, or TIMP-1 (Chemicon International, Inc., Temecula, CA, USA).

Techniques: Infection, MANN-WHITNEY